GenOuest Bioinformatics Platform
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Language
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Run a new blast
GenOuest
Paste your sequence (FASTA format)
Or select a file (FASTA format)
Program
blastn (nuc. vs nuc.)
blastp (prot. vs prot.)
blastx (nuc. vs prot.)
tblastn (prot. vs nuc.)
tblastx (nuc. vs nuc., but at protein level)
Databank
all EST
all reads
Assembly v2
Gnomon transcripts predictions
reads not assembled into scaffolds
RefSeq transcripts
Scaffolds
transcripts predictions
Gnomon peptides predictions
proteins predictions
RefSeq peptides
Expect
1e-10
0.0001
0.01
0.1
1
10
The statistical significance threshold for reporting matches.
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Substitution matrix for scoring any pair of residues.
Low complexity
Mask off segments of the query sequence that have low compositional complexity.
Lower Case
Allows you to customize what is filtered by writting filtered regions in lower case.
Descriptions
0
10
50
100
250
500
Number of single line descriptions to show
Alignments
0
10
50
100
250
500
Number of alignments to show
Output file format
0- Pairwise
1- Query-anchored showing identities
2- Query-anchored no identities
3- Flat query-anchored, show identities
4- Flat query-anchored, no identities
5- Query-anchored no identities and blunt ends
6- Flat query-anchored, no identities and blunt ends
7- XML Blast output
8- Tabular output
9- Tabular output with comments
10- ASN, text
11- ASN, binary
Job title
Optional, give a title to this job (will be displayed in emails and history)
Email address
Optional, if you want to receive the results by email
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