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Version 4.8.1

Use this form to submit motifs to FIMO to be used in searching a sequence database.

Data Submission Form
Your e-mail address:

Re-enter e-mail address:

Your motif file:
Sample DNA minimal motif format file.

Sequence database to search--select one of the following:

A supported database:


Your FASTA sequence file (1000000 sequence characters maximum):

Sample DNA database.
Description of your motifs:
p-value output theshold

Scan given strand only


FIMO Custom Tracks For the UCSC Genome Browser

The links below display custom tracks for FIMO in the UCSC Genome Browser. The tracks display statistically significant matches between the human genome and motifs from the JASPAR CORE 2009 and TRANSFAC 10.2 motif databases. The quality of each match is summarized as a q-value, defined as the minimal false discovery rate threshold at which the match would be deemed significant. Only matches with a q-value ≤ 0.1 are shown.