Use this form to find enriched spacings between a primary motif
and each motif in database of secondary motifs for a set of
sequences. Typically, the sequences will be centered on ChIP-seq peaks.
Discover enriched spacings between motifs.
Select a file of FASTA formatted DNA sequences or paste in
actual FASTA formatted
DNA sequences to analyse motif spacings.
to get an idea of input that works well for SpaMo.
Spamo expects a DNA motif file. Only the first motif will be
used. See the sample motif file.
SpaMo can use databases installed on the server or search a user
uploaded database in MEME DNA motif format
by selecting the "Upload Your Own Database" option.
For more information browse the
An uploaded database is a normal MEME DNA motif file with
lots of motifs. The uploaded database must be smaller than
The email is used to notify you of your results.
This writes out a text file for every primary and secondary
motif which has a significant spacing. The text file contains
fields which from left to right are: