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GLAM2SCAN is a tool for finding occurrences of a GLAM2 motif in a sequence database.

Because GLAM2 motifs may contain gaps, standard search tools such as MAST and FIMO cannot handle them. Hence the need for GLAM2SCAN.

Here is a GLAM2SCAN sample output. GLAM2SCAN reports a score for each site, higher scores indicating better matches to the motif. The output includes the top 25 highest-scoring sites.