Protomata 2.0

Protomata learner

Job title

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Use sequences PLMA selection

Inputtype
Upload a PLMA file	Select an already generated PLMA file (sample). File size is limited to 5Mb

Use PLMA Training sequences

Paste your sequences	FASTA format (sample). Length is limited to 5Mb
Or select a file	FASTA format. File size is limited to 5Mb
Remove redundant sequences	Maximum percentage of identity allowed between sequences.

PLMA options

Significativity of fragment similarity	Minimal significativity.
Consensus	Permissive block intersections (experimental)
Maximum fragments size

Protomaton options

Quorum values	The quorum is the minimal sequences weight in a block required to keep it. It can be expressed as a percentage of the total sequences weight, or directly as the minimal sum of sequences weights. A protomaton will be generated for each value, separated by spaces or commas.
Weight sequences	If selected each sequence have a weight representing how unique it is in the set. Otherwise, each sequence have a fixed weight of 1.
Pseudocounts

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